Announcement:
Workflow4experimenters (W4E) course 2021: pre-registration
We are happy to announce the next Workflow4Experimenters (W4E) international course 2021: Using Galaxy and the Workflow4metabolomics infrastructure to analyse your own metabolomics data.
Please save the date: 11-15 October 2021 at "UMR Toxalim INRAE", Toulouse - France
For more information: Workflow4Experimenters (W4E) international course 2021
EBI-W4M training: Introduction to Metabolomics Analysis
This course will provide an introduction to metabolomics data analysis. It will focus on Liquid Chromatography – Mass Spectrometry techniques and will encompass a combination of lectures and practical sessions covering principles of experimental design, data standards and analysis. Participants will learn about data sharing of metabolomics data with the EMBL-EBI’s MetaboLights repository. Practicals will explore each stage of data analysis using training datasets and use freely-available metabolomics tools accessed through the Workflow4Metabolomics platform. The content will allow participants to create their own open-source analysis workflows to process LC-MS data based on the examples used during the course. This course is aimed at scientists new to the field of metabolomics who want to gain insights into the data analysis process. The course assumes little prior knowledge of using bioinformatics tools and the workflow platform covered will allow a wide-range of backgrounds to access the practical content. Ideal applicants will be those wanting to include metabolite profiling in their current research, either as they move into the field or in addition to other -omics data work they are currently engaged in.
Date: Monday 30 March - Thursday 2 April 2020
Venue: European Bioinformatics Institute (EMBL-EBI) - Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, United Kingdom
Application opens: Monday 23 September 2019
Application deadline: Friday 29 November 2019
Participation: Open application with selection / * * * Infos & Registration * * *
Contact: Meredith Willmott - Franck Giacomoni
Registration fee: £650 - Including meals and accommodation
Last W4E editions:
Workflow4Experimenters (W4E) international course 2020: Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data - Brussels
Workflow4Experimenters (W4E) international course 2018: Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data - Paris
Workflow4Experimenters (W4E) european course 2017: Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data - Paris
Workflow4Experimenters (W4E) international course 2016: Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data - Roscoff
Workflow4Experimenters (W4E) course 2015: Traitement des données métabolomiques sur l'infrastructure online Workflow4Metabolomics - Roscoff
Workflow4Experimenters (W4E) course 2014: Initiation au traitement et à l'analyse des données métabolomiques sur la plateforme scientifique web Galaxy IFB-MetaboHUB - Lyon
W4M at Conferences
| Galaxy Conf Comm 2019 | Fribourg, Germany |
Talk: "Workflow4metabolomics an international computing infrastructure for metabolomics" - Lecorguillé, G., Pétéra, M. Training: - "Metabolomics data analysis I" - Lecorguillé, G., Pétéra, M. |
| Metabolomics 2019 | The Hague, NDL |
Workshop: Metabolomics data processing with Introduction to the Galaxy platform W4M including general data pre-processing principles (Dr. Dara Daygon, Dr. Yann Guitton) Practical: Workflow4Metabolomics as a tool for metabolomics data processing (Yann Guitton) |
| ELIXIR Galaxy Conference 2018 | Fribourg, Germany | Talk: "W4M: Toward an international computing infrastructure and a tools showcase for Metabolomics" - Lecorguillé, G., Giacomoni, F., Caron,C. |
| Galaxy Conference Community 2017 | Montpellier, France | Talk: "W4M: Toward an international computing infrastructure and a tools showcase for Metabolomics" - Lecorguillé, G., Giacomoni, F., Caron,C. |
W4M Training
Coming soon:
| Date | Place | Training |
|---|---|---|
| 15-19/03/2021 | Sète, France | Chemomics : 2eme Ecole technique mixte chimiométrie-métabolomique - Bar camp ChemFlow/W4M |
| 11-15/10/2021 | Toulouse, France | Workflow4experimenters (W4E) course 2021 |
Past:
| Date | Place | Training |
|---|---|---|
| 05-06/11/2020 | Breda, NDL | Avans Galaxy workshop - Y Guitton provide one presentation of W4M during Day 2 - Introduction of to XCMS, Analyzing LC-MS data with Galaxy by XCMS functions |
| 18-22/11/2019 | Sète, France | Chemomix : 1ere Ecole technique mixte chimiométrie-métabolomique - Bar camp ChemFlow/W4M |
| 21/01/2020 | Toulouse, France | Interactive tutorial, How to process LC-MS data with workflow4metabolomics.org - European RFMF Metabomeeting 2020 - Y Guitton, M. Tremblay-Franco, F. Giacomoni |
| 16-21/06/2019 | St Etienne, France | ETEC 2019 - Approches "Omiques" en ecologie chimique - Atelier Metabolomique avec W4M - B. Dieme |
| 21-23/03/2018 | EBI - UK | We host on our Infrastructure a training session (3 courses) and E. Thévenot provide one of these course |
| 11-15/09/2017 | Pula, Italy | Workflow4Metabolomics participates to CloudMET 2017, the 1st scientific school on Cloud-based Metabolomics Data Analysis and Collaboration. |
| 12-15/06/2017 | Lausanne, Switzerland | Metabolomics: from data to publication, Speaker Yann Guitton (LC-MS data pre-processing/MS data processing) |
| 6-9/06/2017 | Paris, France | Applications de R pour l’analyse de données spectroscopiques SM et RMN : XCMS et Batman. Alain PARIS (Muséum d'Histoire Naturelle) |
| 29/05-02/06/2017 | Paris, France | Workflow4Experimenters (W4E) international course 2017: Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data. Keynote speakers: Tim Ebbels (Imperial College), Steffen Neumann (IPB Halle) and Ralf Weber (Birmingham University). |
| 28-02/12/2016 | Roscoff, France | Workflow4Experimenters (W4E) course 2016: Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data |
| 08/11/2016 | Toulouse, France | Master in Structural and Functional Biology (Univ P. Sabatier) - Introduction to Statistics for Metabolomics and Proteomics - Marie Tremblay-Franco |
| 12-16/09/2106 | Sardenia, Italya | 2nd Metabolomics Sardinian Scientific School: How to bridge metabolomics and genomics - The Workflow4Metabolomics (W4M) online infrastructure for omics analysis with Galaxy [PDF] |
| 27/11/2015 | Tours, France | Atelier "Analyses multivariées des données métabolomiques" dans le cadre du workshop "Pharmaco-métabolomique et recherche de nouveaux biomarqueurs en onco-pharmacologie" |
| 21-25/09/2015 | Roscoff, France | Ecole-chercheurs : Traitement des données métabolomiques sur l'infrastructure online Workflow4Metabolomics |
| 19/05/2014 | RFMF / Lyon,France | Workshop: Initiation au traitement et à l'Analyse des données métabolomiques |
| 19-20/03/2014 | Clermont, France | Galaxy pour l'analyse de données métabolomique |
| 12-14/03/2014 | Roscoff, France | Galaxy for developper |
| 28/01/2014 | Roscoff, France | Galaxy pour l'analyse de données métabolomique |
Partners Training
| DATE | PLACE | TRAINING |
|---|---|---|
| 08, 09 and 10th november, 2016 | Facultad de Agronomía, Montevideo, Uruguay | Master in Nutrition - Metabolomics as a tool for nutritional research - Dr S. Polakof |
| 26 - 29 September, 2016 | Lyon, France | Nutrition périnatale : Enjeux et conséquences pour l’alimentation humaine et les pratiques d’élevage - Dr N. Cabaton, JP Antignac, MC Alexandre |
| 26 November, 2015 | Camberra, Australia | Training in NMR data analysis |