Events

(Updated 21/12/23)

Announcement:

Workflow4experimenters (W4E) course 2024: 

We are happy to announce the next Workflow4Experimenters (W4E) international course 2024: Using Galaxy and the Workflow4metabolomics infrastructure to analyse your own metabolomics data.

Please save the date:  Monday 8 April - Friday 12 April 2024 in Archamps, France + Online pre-sessions before the course from 25-29 March (10 to 12 am) 

For more information: Workflow4Experimenters (W4E) international course 2024  - Pre-registration will open soon

 

EBI-W4M training: Introduction to Metabolomics Analysis

This course will provide an introduction to metabolomics through lectures and hands-on sessions, using publicly available data, software, and tools. Participants will become familiar with the current state of experimental design, data acquisition (LC-MS, MS imaging), processing, and modelling. In addition, they will learn about community standards and sharing in metabolomics, particularly through using the EMBL-EBI’s MetaboLights repository and Galaxy infrastructure. Participants will learn through hands-on tutorials to use tools available for data analysis and data submission. Additionally, case studies will be used to discuss and show how to employ the week’s learning.


Date: New session in 2024 keep an eye on EMBL-EBI web site   
Venue: European Bioinformatics Institute (EMBL-EBI) - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom   
Application opens: soon   
Application deadline: -   
Participation: Open application with selection / * * * Infos & Registration * * *   
Contact: Jane Reynolds - Yann Guitton   
Registration fee: £xxx - Including meals and accommodation

 

Last W4E editions:

Workflow4Experimenters (W4E) international course 2023: Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data with webinar session and in person class - Paris

Workflow4Experimenters (W4E) international course 2021: Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data - Toulouse

Workflow4Experimenters (W4E) international course 2020: Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data - Brussels

Workflow4Experimenters (W4E) international course 2018: Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data - Paris

Workflow4Experimenters (W4E) european course 2017: Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data - Paris

Workflow4Experimenters (W4E) international course 2016: Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data - Roscoff

Workflow4Experimenters (W4E) course 2015: Traitement des données métabolomiques sur l'infrastructure online Workflow4Metabolomics - Roscoff

Workflow4Experimenters (W4E) course 2014: Initiation au traitement et à l'analyse des données métabolomiques sur la plateforme scientifique web Galaxy IFB-MetaboHUB - Lyon

 

W4M at Conferences

Galaxy Conf Comm 2019Fribourg, Germany

Talk: "Workflow4metabolomics an international computing infrastructure for metabolomics" - Lecorguillé, G., Pétéra, M.

Training: - "Metabolomics data analysis I" - Lecorguillé, G., Pétéra, M.

Metabolomics 2019The Hague, NDL

Workshop:  Metabolomics data processing with Introduction to the Galaxy platform W4M including general data pre-processing principles (Dr. Dara Daygon, Dr. Yann Guitton)

Practical: Workflow4Metabolomics as a tool for metabolomics data processing (Yann Guitton)

 ELIXIR Galaxy Conference 2018Fribourg, Germany Talk: "W4M: Toward an international computing infrastructure and a tools showcase for Metabolomics" - Lecorguillé, G., Giacomoni, F., Caron,C.
Galaxy Conference Community 2017Montpellier, FranceTalk: "W4M: Toward an international computing infrastructure and a tools showcase for Metabolomics" - Lecorguillé, G., Giacomoni, F., Caron,C.

 

 

W4M Training

Past:

DatePlaceTraining
17-20/10/2022Sète, FranceChemomics : 3eme Ecole technique mixte chimiométrie-métabolomique - Bar camp ChemFlow/W4M
15-19/03/2021Sète, France RemoteChemomics : 2eme Ecole technique mixte chimiométrie-métabolomique - Bar camp ChemFlow/W4M
11-15/10/2021Toulouse, FranceWorkflow4experimenters (W4E) course 2021
05-06/11/2020Breda, NDLAvans Galaxy workshop - Y Guitton provide one presentation of W4M during Day 2 - Introduction of to XCMS, Analyzing LC-MS data with Galaxy by XCMS functions
18-22/11/2019Sète, FranceChemomix : 1ere Ecole technique mixte chimiométrie-métabolomique - Bar camp ChemFlow/W4M
21/01/2020Toulouse, FranceInteractive tutorial, How to process LC-MS data with workflow4metabolomics.org - European RFMF Metabomeeting 2020 - Y Guitton, M. Tremblay-Franco, F. Giacomoni
16-21/06/2019St Etienne, FranceETEC 2019 - Approches "Omiques" en ecologie chimique - Atelier Metabolomique avec W4M - B. Dieme
21-23/03/2018EBI - UKWe host on our Infrastructure a training session (3 courses) and E. Thévenot provide one of these course
11-15/09/2017Pula, ItalyWorkflow4Metabolomics participates to CloudMET 2017, the 1st scientific school on Cloud-based Metabolomics Data Analysis and Collaboration.
12-15/06/2017Lausanne, SwitzerlandMetabolomics: from data to publication, Speaker Yann Guitton (LC-MS data pre-processing/MS data processing)
6-9/06/2017Paris, FranceApplications de R pour l’analyse de données spectroscopiques SM et RMN : XCMS et Batman. Alain PARIS (Muséum d'Histoire Naturelle)
29/05-02/06/2017Paris, FranceWorkflow4Experimenters (W4E) international course 2017: Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data.    
Keynote speakers: Tim Ebbels (Imperial College), Steffen Neumann (IPB Halle) and Ralf Weber (Birmingham University).
28-02/12/2016Roscoff, FranceWorkflow4Experimenters (W4E) course 2016: Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data
08/11/2016Toulouse, FranceMaster in Structural and Functional Biology (Univ P. Sabatier) - Introduction to Statistics for Metabolomics and Proteomics - Marie Tremblay-Franco
12-16/09/2106Sardenia, Italya2nd Metabolomics Sardinian Scientific School: How to bridge metabolomics and genomics - The Workflow4Metabolomics (W4M) online infrastructure for omics analysis with Galaxy [PDF]
27/11/2015Tours, FranceAtelier "Analyses multivariées des données métabolomiques" dans le cadre du workshop "Pharmaco-métabolomique et recherche de nouveaux biomarqueurs en onco-pharmacologie"
21-25/09/2015Roscoff, FranceEcole-chercheurs : Traitement des données métabolomiques sur l'infrastructure online Workflow4Metabolomics
19/05/2014RFMF / Lyon,FranceWorkshop: Initiation au traitement et à l'Analyse des données métabolomiques
19-20/03/2014Clermont, FranceGalaxy pour l'analyse de données métabolomique
12-14/03/2014Roscoff, FranceGalaxy for developper
28/01/2014Roscoff, FranceGalaxy pour l'analyse de données métabolomique

 

Partners Training

DATEPLACETRAINING
08, 09 and 10th november, 2016Facultad de Agronomía, Montevideo, UruguayMaster in Nutrition - Metabolomics as a tool for nutritional research - Dr S. Polakof
26 - 29 September, 2016Lyon, FranceNutrition périnatale : Enjeux et conséquences pour l’alimentation humaine et les pratiques d’élevage - Dr N. Cabaton, JP Antignac, MC Alexandre
26 November, 2015Camberra, AustraliaTraining in NMR data analysis