HOW TO

W4E 2017 - Paris :

session presentations Author(s) PDF
Day 1: Introduction Introduction to the course Christophe Caron, W4M Core Team  
  Galaxy initiation Gildas Le Corguillé Download
Day 2: Preprocessing LC-MS data preprocessing Jean-Francois Martin Download
  LC-MS annotation with CAMERA Yann Guitton Download
  GC-MS data preprocessing Yann Guitton Download
  NMR data preprocessing Marie Tremblay-Franco, Cécile Canlet, Manon Martin Download
Day 3: Statistics Filtering and correcting data Mélanie Petera Download
  Univariate satistics Marie Tremblay-Franco Download
  Multivariate modeling Etienne Thévenot Download
  Multi Level Analysis Yann Guitton Download
 Day 4: Annotation

Databases

Franck Giacomoni Download
  NMR Annotation Marie Tremblay-Franco, Cécile Canlet Download
  Referencing Histories Etienne Thévenot Download

 

 

 

W4E 2016 :

W4E courses 2016 Author(s) PDF
Course presentation Christophe Caron, W4M Core Team  
Initiation Galaxy Gildas Le Corguillé Download
LC-MS - Pre-processing (xcms)  JF Martin Download
GC-MS - Processing Y. Guitton Download
 MS data processing - Filtering and correcting data  Mélanie Petera Download
 Statiscal Workflows  Etienne Thévennot, Marie Tremblay-Franco Download

 NMR Annotation

 M. Tremblay-Franco, C. Canlet Download
 NMR - Pre-processing  M. Tremblay-Franco, C. Canlet Download
     
     

 

W4E 2015

 

W4M courses 2015 Author(s) PDF
Course presentation Christophe Caron, Franck Giacomoni Download
Initiation Gildas Le Corguillé, Misharl Monsoor, Marion Landi Download
LC-MS - Pre-processing (xcms) W4M Core Team Download
MS data processing - Filtering and correcting data W4M Core Team Download
Using Galaxy4Metabolomics - W4M table format for Galaxy W4M Core Team Download
How to check the format of the 3 .tsv tables Etienne Thévenot Download
How to perform statistical analysis ? - Introduction Etienne Thévenot, Marie Tremblay-Franco, Mélanie Pétéra, Gildas Le Corguillé Download
How to perform statistical analysis ? - Exploratory data analysis Etienne Thévenot, Mélanie Pétéra, Jean-François Martin, Gildas Le Corguillé Download
How to perform statistical analysis ? - PCA analysis and (O)PLS(-DA) modelling Etienne Thévenot Download
Les banques d'annotation - Annotation Yann Guitton, Franck Giacomoni Download

 

HOWTO

 

CATEGORY FIELD Description PDF

Galaxy

 

Prepare input datasets

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Galaxy

 

Use single files as input and run xcmsSet in parallel

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Galaxy   Import datasets Download
Galaxy   Cleanup datasets Download
Galaxy   Build And Configure A Workflow Download
Galaxy   Share Histories And Workflows Download
       
Preprocessing LC-MS Perform Preprocessing using XCMS Download
       
Quality Control Common Format Data For Postprocessing Download
       
Batch correction LC-MS and GC-MS Perform Drift And Batch Correction Download
       
Statistics Common Perform Univariate Analyzes Download
Statistics Common Perform Multivariate Analyzes Download
       
Annotation LC-MS Perform LCMS Annotations Download
Annotation GC-MS Use NIST Download